theba.core.RegionMask Class Reference

List of all members.

Public Member Functions
	RegionMask ()
	RegionMask (short id, Stack volume, BoxBounds bounds)
boolean	isSet (int xp, int yp, int zp)
short	getPixelAt (int xp, int yp, int zp)
int	getWidth ()
int	getHeight ()
int	getDepth ()
Package Attributes
int	width
int	height
int	depth

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Detailed Description

This class defines a read-only bit-masked 3D region

Author:

jens

Definition at line 9 of file RegionMask.java.

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Constructor & Destructor Documentation

theba.core.RegionMask.RegionMask

(

)

Definition at line 19 of file RegionMask.java.

theba.core.RegionMask.RegionMask	(	short	id,
		Stack	volume,
		BoxBounds	bounds
	)

Definition at line 22 of file RegionMask.java.

References theba.core.RegionMask.depth, theba.core.RegionMask.height, theba.core.RegionMask.width, theba.core.BoxBounds.xmax, theba.core.BoxBounds.xmin, theba.core.BoxBounds.ymax, theba.core.BoxBounds.ymin, theba.core.BoxBounds.zmax, and theba.core.BoxBounds.zmin.

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Member Function Documentation

int theba.core.RegionMask.getDepth

(

)

Reimplemented in theba.core.RegionMask2D.

Definition at line 70 of file RegionMask.java.

References theba.core.RegionMask.depth.

Referenced by theba.descriptors.SurfaceDescriptor.measure(), theba.descriptors.SizeDescriptor2D.measure(), theba.descriptors.SizeDescriptor.measure(), and theba.descriptors.FreeSurfaceDescriptor.measure().

int theba.core.RegionMask.getHeight

(

)

Reimplemented in theba.core.RegionMask2D.

Definition at line 66 of file RegionMask.java.

References theba.core.RegionMask.height.

Referenced by theba.descriptors.YoungBendingEnergy.measure(), theba.descriptors.SurfaceDescriptor.measure(), theba.descriptors.SolidityDescriptor.measure(), theba.descriptors.SizeDescriptor2D.measure(), theba.descriptors.SizeDescriptor.measure(), theba.descriptors.OrientationDescriptor.measure(), theba.descriptors.InternalRegionDescriptor.measure(), theba.descriptors.FreeSurfaceDescriptor.measure(), theba.descriptors.EccentricityDescriptor.measure(), theba.descriptors.ConvexityDescriptor.measure(), theba.descriptors.CircularityDescriptor.measure(), theba.descriptors.BendingEnergyDescriptor.measure(), theba.descriptors.AvgYoungCurvature.measure(), and theba.descriptors.AvgCurvature.measure().

short theba.core.RegionMask.getPixelAt	(	int	xp,
		int	yp,
		int	zp
	)

This is a helper-function to determine if pixels outside this region is occupied by other regions.

Returns:

The value at position x,y,z

Reimplemented in theba.core.RegionMask2D.

Definition at line 52 of file RegionMask.java.

References theba.core.RegionMask.depth, theba.core.Stack.getVoxelUnchecked(), theba.core.RegionMask.height, theba.core.RegionMask.width, theba.core.BoxBounds.xmin, theba.core.BoxBounds.ymin, and theba.core.BoxBounds.zmin.

Referenced by theba.descriptors.FreeSurfaceDescriptor.measure().

int theba.core.RegionMask.getWidth

(

)

Reimplemented in theba.core.RegionMask2D.

Definition at line 62 of file RegionMask.java.

References theba.core.RegionMask.width.

Referenced by theba.descriptors.YoungBendingEnergy.measure(), theba.descriptors.SurfaceDescriptor.measure(), theba.descriptors.SolidityDescriptor.measure(), theba.descriptors.SizeDescriptor2D.measure(), theba.descriptors.SizeDescriptor.measure(), theba.descriptors.OrientationDescriptor.measure(), theba.descriptors.InternalRegionDescriptor.measure(), theba.descriptors.FreeSurfaceDescriptor.measure(), theba.descriptors.EccentricityDescriptor.measure(), theba.descriptors.ConvexityDescriptor.measure(), theba.descriptors.CircularityDescriptor.measure(), theba.descriptors.BendingEnergyDescriptor.measure(), theba.descriptors.AvgYoungCurvature.measure(), and theba.descriptors.AvgCurvature.measure().

boolean theba.core.RegionMask.isSet	(	int	xp,
		int	yp,
		int	zp
	)

Used to evaluate if a given voxel is set or not

Returns:

The value at position x,y,z

Reimplemented in theba.core.RegionMask2D.

Definition at line 36 of file RegionMask.java.

References theba.core.RegionMask.depth, theba.core.Stack.getVoxelUnchecked(), theba.core.RegionMask.height, theba.core.RegionMask.width, theba.core.BoxBounds.xmin, theba.core.BoxBounds.ymin, and theba.core.BoxBounds.zmin.

Referenced by theba.core.gui.Binary3DImage.getCell(), theba.descriptors.YoungBendingEnergy.measure(), theba.descriptors.SurfaceDescriptor.measure(), theba.descriptors.SolidityDescriptor.measure(), theba.descriptors.SizeDescriptor2D.measure(), theba.descriptors.SizeDescriptor.measure(), theba.descriptors.OrientationDescriptor.measure(), theba.descriptors.InternalRegionDescriptor.measure(), theba.descriptors.FreeSurfaceDescriptor.measure(), theba.descriptors.EccentricityDescriptor.measure(), theba.descriptors.ConvexityDescriptor.measure(), theba.descriptors.CircularityDescriptor.measure(), theba.descriptors.BendingEnergyDescriptor.measure(), theba.descriptors.AvgYoungCurvature.measure(), and theba.descriptors.AvgCurvature.measure().

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Member Data Documentation

int theba.core.RegionMask.depth [package]

Definition at line 17 of file RegionMask.java.

Referenced by theba.core.RegionMask2D.getDepth(), theba.core.RegionMask.getDepth(), theba.core.RegionMask.getPixelAt(), theba.core.RegionMask.isSet(), theba.core.RegionMask.RegionMask(), and theba.core.RegionMask2D.RegionMask2D().

int theba.core.RegionMask.height [package]

Definition at line 17 of file RegionMask.java.

Referenced by theba.core.RegionMask2D.getHeight(), theba.core.RegionMask.getHeight(), theba.core.RegionMask2D.getPixelAt(), theba.core.RegionMask.getPixelAt(), theba.core.RegionMask2D.isSet(), theba.core.RegionMask.isSet(), and theba.core.RegionMask.RegionMask().

int theba.core.RegionMask.width [package]

Definition at line 17 of file RegionMask.java.

Referenced by theba.core.RegionMask2D.getPixelAt(), theba.core.RegionMask.getPixelAt(), theba.core.RegionMask2D.getWidth(), theba.core.RegionMask.getWidth(), theba.core.RegionMask2D.isSet(), theba.core.RegionMask.isSet(), and theba.core.RegionMask.RegionMask().

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The documentation for this class was generated from the following file:

• src/theba/core/RegionMask.java