theba.core.gui.Binary3DImage Class Reference

List of all members.

Public Member Functions
	Binary3DImage (String pathname, int x, int y, int z)
	Binary3DImage (RegionMask regionMask, int x, int y, int z)
boolean	readImageFile ()
boolean	readRLCCompressedImageFile ()
void	printImageArray ()
int	compareByteArrays ()
byte	getVoxelValue (int x, int y, int z)
int	getVoxelValueInt (int x, int y, int z)
int[]	getCell (int x, int y, int z)
byte	getByte (int position)
int	getX ()
int	getY ()
int	getZ ()
Static Public Member Functions
static byte[]	getByteList (byte bits)
static void	printByteContent (byte b)
Public Attributes
byte[]	image
int[]	image2

Detailed Description

This class represent a binary 3D image. It stores information about the image, and the image itself.

It can read two different image files: Uncompressed and RLE compressed files. The dimensions of the image has to be specified when creating the Binary3DImage object.

The image data is stored in the variable image, which is an array of type byte[].

Definition at line 20 of file Binary3DImage.java.

Constructor & Destructor Documentation

theba.core.gui.Binary3DImage.Binary3DImage	(	String	pathname,
		int	x,
		int	y,
		int	z
	)

Constructs a new Binary3DImage object.

Parameters:

	pathname	the file path of the image
	x	the x size
	y	the y size
	z	the z size

Definition at line 49 of file Binary3DImage.java.

References theba.core.gui.Binary3DImage.image, and theba.core.gui.Binary3DImage.image2.

theba.core.gui.Binary3DImage.Binary3DImage	(	RegionMask	regionMask,
		int	x,
		int	y,
		int	z
	)

Constructs a new Binary3DImage object.

Parameters:

	x	the x size
	y	the y size
	z	the z size

Definition at line 73 of file Binary3DImage.java.

References theba.core.gui.Binary3DImage.image, and theba.core.gui.Binary3DImage.image2.

Member Function Documentation

int theba.core.gui.Binary3DImage.compareByteArrays ( )

Compares two byte arrays which are supposed to be equel. Helpful for debugging.

Returns:: number of unequal bits

Definition at line 183 of file Binary3DImage.java.

References theba.core.gui.Binary3DImage.image, and theba.core.gui.Binary3DImage.image2.

byte theba.core.gui.Binary3DImage.getByte ( int position )

Returns a byte (containing 8 voxel values) at a given position in the image array

Parameters:

position

the position in the array

Returns:: a byte value representing 8 values

Definition at line 281 of file Binary3DImage.java.

References theba.core.gui.Binary3DImage.image.

static byte [] theba.core.gui.Binary3DImage.getByteList ( byte bits ) [static]

Converts a byte value (containing 8 voxels) into a byte array.

Parameters:

bits

the byte value

Returns:: a byte array

Definition at line 296 of file Binary3DImage.java.

int [] theba.core.gui.Binary3DImage.getCell	(	int	x,
		int	y,
		int	z
	)

Returns a cube consisting of 8 vertices, where each vertex represents a voxel in the image. Used during the marching step of the discrete marching cubes algorithm.

Parameters: